New NIH Genomics Data Management Policy

New NIH Genomics Data Management Policy

Announcements, News
The National Institutes of Health (NIH) has issued updated data management policies, which introduce new security standards in the Genomic Data Sharing (GDS) Policy. Specifically, “NIH Security Best Practices for Users of Controlled-Access Data” require that data managed on institutional IT systems and third-party computing infrastructures that meet certain standards in accordance with NIST SP 800-171 “Protecting Controlled Unclassified Information in Nonfederal Information Systems and Organizations.” These new policies will be effective on January 25, 2025, at which point adherence to this standard will be included in new or renewed Data Use Certifications or similar agreements stipulating terms of access to controlled-access human genomic data regardless of whether the Approved User is supported by NIH or not. Read more.
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CCS/ITSRCI Seminar Series on AI in Practice – January 23, 2025

CCS/ITSRCI Seminar Series on AI in Practice – January 23, 2025

Announcements, CCS RCD Seminar Series
January 23, 202511:45 AM - 12:45 PM (Temporary Timeslot) Speaker:Michael Murray, Rosenberg College of Law, University of Kentucky Where:327 McVey Hall(Zoom link: https://uky.zoom.us/j/82467171189) Title:Learning new subjects with Gen AI: AI tutoring and the search for grounded truth Abstract: This talk and demonstration will provide an overview of research into the use of gen AI to assist learning at undergrad, graduate school, and professional school levels. It will discuss experiments with a growing number of gen AI systems using custom instructions, priming, retrieval-augmented generation (RAG) techniques, and prompt engineering to test Gen AI's functionality in learning new areas of study and reviewing prior learning, and in minimizing confabulations (hallucinations) that deviate from grounded truth. Click here to see the complete list of speakers.
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CCS/ITSRCI Seminar Series on AI in Practice – January 16, 2025

CCS/ITSRCI Seminar Series on AI in Practice – January 16, 2025

Announcements, CCS RCD Seminar Series
January 16, 202511:45 AM - 12:45 PM (Temporary Timeslot) Speaker:Michael Murray, Rosenberg College of Law, University of Kentucky Where:327 McVey Hall(Zoom link: https://uky.zoom.us/j/82467171189) Title:The intersection of ML, Generative AI, and Intellectual Property Law Abstract: This talk will discuss several of the leading intellectual property law issues involving gen AI. It will discuss the two primary copyright law issues: whether the training of large language models (LLMs) and the outputs of gen AI systems constitute copyright infringement, and whether work created with the assistance of gen AI systems should be copyrightable and owned by the human end-user. It will also raise legal issues raised by deepfakes under right of publicity (name, image, likeness) law, privacy, trademark, and various criminal laws. Finally, the talk will discuss ethical considerations in law and general…
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CCS/ITSRCI Seminar Series on AI in Practice – November 14, 2024

CCS/ITSRCI Seminar Series on AI in Practice – November 14, 2024

Announcements, CCS RCD Seminar Series
November 14, 202412:15 pm - 1:15 pm Speaker:Samson Cheung, Electrical and Computer Engineering, University of Kentucky Where:327 McVey Hall(Zoom link: https://uky.zoom.us/j/82467171189) Title:Challenges in building AI systems for Smart Health Abstract: Artificial intelligence is touted as the next frontier in healthcare, promising to revolutionize medical research and deliver equitable and low-cost care to all. However, there are many significant challenges to apply and develop AI for medical applications. Deep-learning based systems are at the forefront of AI but they are notorious at demanding large amounts of carefully labeled and annotated data. While simple labeling tasks can rely on crowdsourcing, medical data labeling requires expertise that could be rare and costly. In addition, there are usually significant bias and class imbalance issues with medical data. Expanding the knowledge base and diversity of…
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CCS/ITSRCI Seminar Series on AI in Practice – November 7, 2024

CCS/ITSRCI Seminar Series on AI in Practice – November 7, 2024

Announcements, CCS RCD Seminar Series
November 7, 202412:15 pm - 1:15 pm Speaker:Tony Mangino, Department of Biostatistics, University of Kentucky Where:327 McVey Hall(Zoom link: https://uky.zoom.us/j/82467171189) Title:Using the RGAN Package for Implementing Generative Models for Biomedical Applications Abstract: While generative adversarial networks (GANs) are widely implemented using a variety of software packages and programming languages, many applied researchers make use of the R Statistical Software Package to conduct their analyses. The development of the RGAN package (Neunhoeffer, 2022) now allows for a user-friendly command line interface for training GANs on tabular or image data in the R environment. This tutorial guides attendees through the process of training and evaluating a GAN trained using the RGAN framework through a real clinical example dataset. Attendees who wish to follow along must have the following software installed: The R…
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CCS/ITSRCI Seminar Series on AI in Practice – October 31, 2024

CCS/ITSRCI Seminar Series on AI in Practice – October 31, 2024

Announcements, CCS RCD Seminar Series
October 31, 202412:15 pm - 1:15 pm Speaker:Tony Mangino, Department of Biostatistics, University of Kentucky Where:327 McVey Hall(Zoom link: https://uky.zoom.us/j/82467171189) Title:An introduction to generative AI in Biomedical Applications Abstract: Generative AI has become ubiquitous since the advent of ChatGPT, though the underlying mechanisms are far from novel. Goodfellow’s 2014 introduction of generative adversarial networks (GANs) was a watershed moment for the generative modeling domain and has since been widely used in a wide variety of contexts. This presentation and accompanying tutorial introduce participants to a lesser-used application of GANs: Their ability to generate synthetic patient records with data largely mirroring the same data obtained from real patients. This presentation illustrates an example using data from patients admitted to UK hospitals for either Acute Coronary Syndrome (ACS) or Takotsubo Syndrome (TTS),…
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CCS/ITSRCI Seminar Series on AI in Practice – October 24, 2024

CCS/ITSRCI Seminar Series on AI in Practice – October 24, 2024

Announcements, CCS RCD Seminar Series
October 24, 202412:15 pm - 1:15 pm Speaker:Qiang Ye, Department of Mathematics, University of Kentucky Where:327 McVey Hall(Zoom link: https://uky.zoom.us/j/82467171189) Title:Recurrent Neural Networks and Transformer for Sequential Data Abstract: Many machine learning problems involve sequential data. Recurrent neural networks (RNNs) and Transformer are neural network architectures designed to efficiently model temporal connections within a sequence and handling variable sequence lengths in a dataset. However, RNNs suffer from the so-called vanishing or exploding gradient problems, which also reduces its ability to pass information in a long sequence. Transformer solves this problem through a self-attention mechanism but faces challenges in efficiently scaling to long sequences because the self-attention computation is quadratic with respect to the sequence length. We will present several orthogonal RNN models that we have developed to address the vanishing/exploding…
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AI/ML (virtual) Seminar – October 17, 2024

AI/ML (virtual) Seminar – October 17, 2024

Announcements, CCS RCD Seminar Series
October 17, 202412:15 pm - 1:15 pm Speaker:Aaron Mullen, Institute for Biomedical Informatics, University of Kentucky Where:VIRTUAL!(Zoom link: https://uky.zoom.us/j/82438134047) Title:Forecasting Opioid Incidents for Rapid Actionable Data for Opioid Response in Kentucky Abstract: We present efforts in the fields of machine learning and time series forecasting to accurately predict counts of future opioid overdose incidents around the state of Kentucky. If successful, state governments could use forecasts to properly prepare and distribute resources effectively. The approach taken primarily uses county and district level aggregations of EMS opioid overdose encounters and forecasts future counts at a monthly level. A variety of additional covariates were also tested to determine their impact on the model’s performance. Models with different levels of complexity were evaluated as well to optimize training time and accuracy. The results…
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CCS/ITSRCI Seminar Series on AI in Practice – October 10, 2024

CCS/ITSRCI Seminar Series on AI in Practice – October 10, 2024

Announcements, CCS RCD Seminar Series
October 10, 202412:15 pm Speaker:Md Atik Ahamed, Division of Biomedical Informatics, University of Kentucky Where:327 McVey Hall(Zoom link: https://uky.zoom.us/j/82467171189) Title:Advanced tools and packages for handling tabular data and time series data Abstract: In this comprehensive tutorial, we will assess several state-of-the-art models for analyzing both tabular and time series data. We will begin by discussing the advantages and limitations of models such as XGBoost, TransTab and MambaTab for tabular data, as well as deep learning approaches like PatchTST and TimeMachine models for time series prediction.Following this overview, we will provide a step-by-step walkthrough of how to use corresponding tools and packages effectively. We will focus on real-world datasets and explanations of the packages in a user-friendly manner. Click here to see the complete list of speakers.
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